VRE #9674

Project WP #629: WP4 - VREs Deployment and Operation [Months: 1-30]

Project Task #631: T4.2 VREs Creation and Deployment [Months: 1-30]

Create a VRE for the Sinay SME

Added by Gianpaolo Coro over 2 years ago. Updated about 2 years ago.

Status:ReleasedStart date:Sep 25, 2017
Priority:NormalDue date:Nov 10, 2017
Assignee:Gianpaolo Coro% Done:

100%

VRE_Policy:Private Invite_Policy:VRE_Manager
Milestones:
Duration: 35

Description

VRE name: Sinay

Description: A VRE managed by the Sinay company, with the aim to

  • produce model-based habitat maps of cetaceans
  • produce model-based noise footprint maps of selected offshore activities
  • assess risk and potential impacts

The involved data and models are: abundance data of cetaceans, grid environmental variables, generalized additive (mixed) models (GAM and GAMM), and generalized linear (mixed) models (GLM and GLMM).

The focus areas are the eastern waters of the English Channel and the Mediterranean Sea.

Required applications:

  • GeoExplorer
  • Species Product Discovery
  • Data Catalogue
  • RStudio
  • SAI
  • DataMiner, with the following algorithms:
    • ABSENCE_GENERATION_FROM_OBIS
    • OCCURRENCE_ENRICHMENT
    • FEED_FORWARD_ANN
    • FEED_FORWARD_ANN_DISTRIBUTION
    • MAX_ENT_NICHE_MODELLING
    • SUPPORT_VECTOR_MACHINES_TRAINER
    • SUPPORT_VECTOR_MACHINES_REGRESSOR
    • MAPS_COMPARISON
    • GEO_INTERPOLATION

History

#1 Updated by Massimiliano Assante about 2 years ago

  • Invite_Policy set to VRE_Manager
  • VRE_Policy set to Private
  • Tracker changed from Task to VRE

#2 Updated by Sara Garavelli about 2 years ago

  • Due date set to Nov 10, 2017

#3 Updated by Massimiliano Assante about 2 years ago

  • Status changed from New to Planned

@gianpaolo.coro@isti.cnr.it what do you mean by Data Catalogue? A Dedicated Data Catalogue?

#4 Updated by Massimiliano Assante about 2 years ago

  • Status changed from Planned to In Progress

#5 Updated by Massimiliano Assante about 2 years ago

  • Status changed from In Progress to Available

The VRE is available in the gateway, some required service are missing though https://bluebridge.d4science.org/group/sinay/ @roberto.cirillo@isti.cnr.it can you provide us an estimation date on when the required services will be available in the VRE? Ideally it should be by the end of this week.

#6 Updated by Gianpaolo Coro about 2 years ago

I mean the BlueBRIDGE data catalogue, for consultation.

#7 Updated by Roberto Cirillo about 2 years ago

Massimiliano Assante wrote:

The VRE is available in the gateway, some required service are missing though https://bluebridge.d4science.org/group/sinay/ @roberto.cirillo@isti.cnr.it can you provide us an estimation date on when the required services will be available in the VRE? Ideally it should be by the end of this week.

The required services will be available in the VRE at the end of this week as requested

#8 Updated by Roberto Cirillo about 2 years ago

  • Assignee changed from Massimiliano Assante to Costantino Perciante

The services are in place. @costantino.perciante@isti.cnr.it, please, could you also add the DataCatalogue?

#10 Updated by Paolo Scarponi about 2 years ago

This is the error I get if I try to run an algorithm accepting a csv table as input: "No resource named StatisticalManagerDataBase available in scope /d4science.research-infrastructures.eu/D4Research/Sinay"

#11 Updated by Roberto Cirillo about 2 years ago

I've changed the dataminer cluster. Now this VRE is served by dataminer-prototypes cluster. Please @scarponi@isti.cnr.it, could you retry?

#12 Updated by Costantino Perciante about 2 years ago

Roberto Cirillo wrote:

The services are in place. @costantino.perciante@isti.cnr.it, please, could you also add the DataCatalogue?

did you already ask for a new ckan instance for this?

#13 Updated by Paolo Scarponi about 2 years ago

It works properly now

#14 Updated by Pasquale Pagano about 2 years ago

Costantino Perciante wrote:

Roberto Cirillo wrote:

The services are in place. @costantino.perciante@isti.cnr.it, please, could you also add the DataCatalogue?

did you already ask for a new ckan instance for this?

We do not want to create a new ckan instance but we want to use the new feature that shows only one authority in the VRE.

#15 Updated by Costantino Perciante about 2 years ago

This feature won't be available for the upcoming gCube release (i.e. 4.8).

The only think I can do is to add the portlet there and let it show the BB catalogue. Please, let me know if this is enough or all the resources for publishing need to be added as well

#16 Updated by Pasquale Pagano about 2 years ago

It is too costly the deployment of a dedicated catalog for this VRE. We need to postpone it to when the feature will become available. In the meantime, please let Sinay to be an organization of the BB catalog.

#18 Updated by Costantino Perciante about 2 years ago

  • Assignee changed from Costantino Perciante to Roberto Cirillo

I had to copy the resources available under gCubeApps into the Sinay context. @roberto.cirillo@isti.cnr.it the ckan connector running on ckan-bb2.d4science.org must be available in the new context, otherwise the catalogue won't work. Could you make it running there too? Thanks

After this, the catalogue should be ok

#19 Updated by Massimiliano Assante about 2 years ago

  • Assignee changed from Roberto Cirillo to Costantino Perciante
  • Status changed from Available to Released

Roberto Cirillo wrote:

Massimiliano Assante wrote:

@roberto.cirillo@isti.cnr.it

fixed

It doesn't seem fixed, have you tested it? I did and the error is the same

#20 Updated by Massimiliano Assante about 2 years ago

  • % Done changed from 0 to 90
  • Assignee changed from Costantino Perciante to Roberto Cirillo
  • Status changed from Released to Available

@roberto.cirillo@isti.cnr.it SPD is still not working

#21 Updated by Roberto Cirillo about 2 years ago

  • Assignee changed from Roberto Cirillo to Massimiliano Assante

Massimiliano Assante wrote:

Roberto Cirillo wrote:

Massimiliano Assante wrote:

@roberto.cirillo@isti.cnr.it

fixed

It doesn't seem fixed, have you tested it? I did and the error is the same

Yes, of course.
I had tested it and it was working for me. I had tried to search the Term: "sarda sarda" and I had found 93 records. I've retried now to do the same test with the same result.
Please could you tell me in particular what test have you done and what is the result of the test or, if you have a particular exception, what exception is thrown? Thanks

#22 Updated by Massimiliano Assante about 2 years ago

  • % Done changed from 90 to 100

it works now.

#23 Updated by Massimiliano Assante about 2 years ago

  • Assignee changed from Massimiliano Assante to Gianpaolo Coro
  • Status changed from Available to Released

@s.garavelli@trust-itservices.com the Sinay VRE is operative. I ask @gianpaolo.coro@isti.cnr.it to perform one last test making sure everything is as expected.

#24 Updated by Gianpaolo Coro about 2 years ago

It works, thank you very much.

#25 Updated by Massimiliano Assante about 2 years ago

@anton.ellenbroek@fao.org @s.garavelli@trust-itservices.com the Sinay VRE can be now disseminated, https://bluebridge.d4science.org/group/sinay Please note that the public VRE page is missing though.

#26 Updated by Costantino Perciante about 2 years ago

The catalogue is still not available

#27 Updated by Sara Garavelli about 2 years ago

Has Sinay received all the information? Please let me know
Sara

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