Task #1778

Project WP #641: WP5 - Supporting Blue Assessment: VREs Development [Months: 1-30]

Project Task #642: T5.1 Stock Assessment VRE [Months: 1-30]

Project Activity #1674: VRE Stock Assessment Workplan

Project Activity #1679: ICES Stock Assessment VRE

Toolbox for Data Limited Stocks

Added by Anton Ellenbroek over 3 years ago. Updated 11 months ago.

Status:ClosedStart date:Mar 15, 2017
Priority:UrgentDue date:
Assignee:Scott Large% Done:

100%

Category:-
Sprint:WP05
Infrastructure:
Milestones:
Duration:

Description

Data limited stocks comprise 70 % of ICES stocks. This requires a 'toolbox' for assessment work. Some 5 models are commonly used, and the activity is closely linked to WP8 - BlueSkills. The toolbox should support different user categories; 'GUI' users, modelers, and 'Output reviewers'. The last category use annotation on model output (e.g. in html or markdown), similar to the IRD proposed BFT assessment.


Subtasks

Task #5822: Simple minimal example of Shiny App with ShinyProxyClosedScott Large

Project Activity #5823: Able to deploy docker containersClosed_InfraScience Systems Engineer

Project Activity #7493: Linking work - space with VREs via RClosedScott Large

Task #7491: Length-based indicator applicationClosedScott Large

Task #7492: Use LBI application as shinyproxy use-caseClosedScott Large

Task #9542: DLMtoolkit - FLR data converterRejectedNathan Vaughan


Related issues

Related to BlueBRIDGE - Task #5238: WECAFC Stock assessment support Closed Nov 18, 2016 Jul 31, 2017

History

#1 Updated by Anton Ellenbroek over 3 years ago

  • Parent task set to #1679

#2 Updated by Pasquale Pagano almost 3 years ago

  • Due date changed from Jul 29, 2016 to Oct 01, 2016

#3 Updated by Scott Large over 2 years ago

We have obtained permission to modify Jason Cope's Data Limited Tools shiny app (https://github.com/shcaba/Data-limited-tools). I have run it on http://rstudio.d4science.org/ and it works quite well. Would have been a useful addition to the WP08 ICES training course on DLM.

Todo:
- Translate shiny into "r-dumb" so it can be implemented as-a-service VRE

#4 Updated by Anton Ellenbroek over 2 years ago

  • Related to Task #5238: WECAFC Stock assessment support added

#5 Updated by Scott Large over 2 years ago

With the completion of the ShinyProxy - how do we envisage the deployment of the DLM toolbox? Will the shinyproxy app be a standalone VRE? A weblink that folks can explore? @anton.ellenbroek@fao.org

#6 Updated by Scott Large over 2 years ago

  • Start date changed from Nov 21, 2016 to Mar 15, 2017
  • Due date set to Mar 15, 2017

due to changes in a related task

#7 Updated by Pasquale Pagano 11 months ago

  • Status changed from New to Closed

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