Project Activity #1544: ICES training course, Training course in the R Environment
ICES Training Course in the R Environment (TCRE)
|Status:||Released||Start date:||Dec 03, 2015|
|Priority:||Normal||Due date:||Jan 11, 2016|
|Assignee:||Mike Drew||% Done:|
The development of a new or use of existing VRE(s) for the R Environment course (see attached course proposal). Integration of course specific datasets, extractions and tools into the VRE(s).
#3 Updated by Leonardo Candela over 3 years ago
Please, have a look at https://support.d4science.org/projects/bluebridge/wiki/VREs_Deployment_and_Operation for the procudure for asking for a new VRE.
The request should be a bit more focused on the VRE per se rather than on the course, i.e. please focus in dataset and facilities. In the specific case, a detailed list of R packages is needed.
#5 Updated by Gianpaolo Coro over 3 years ago
According to the call of this morning, this is going to be a first VRE for a training course, to be also evaluated by trainers. Trainers will try to use the Workspace and the online RStudio environment first. No preparatory R-package is required on the RStudio machine (they can be installed by the users themselves). Rather, the following applications should be provided (I list also those available by default):
- Workspace - Social Networking - TabMan with RStudio - Species Product Discovery - GeoExplorer - StatMan with the following Algorithms: DBScan, KMeans, LOF, XMeans, Most Observed Species, Most Observed Taxa, Species Observations per Area, CMSY, SGVM Interpolation, Generic Charts, GEO Charts, Species Observation Lme Area Per Year, Species Observation Meow Area Per Year, Species Observations Trend Per Year, Taxonomy Observations Trend Per Year, Occurrence Enrichment, BiOnym Local, Time Series Analysis, Feed Forward Ann, Feed Forward ANN Distribution
This VRE is going to be tested by people who teach in the biodiversity and stock assessment domains.
#6 Updated by Gianpaolo Coro over 3 years ago
Here is a proposal for a name and description of this VRE:
Name: ICES TCRE
Description: A Virtual Research Environment that supports the "ICES Training Course in the R Environment" (TCRE). The objective of the course is to provide participants with a solid foundation in efficient use of the R environment using various typical and familiar fisheries data sets (landings data, catch data, survey data and tagging data) as case examples. Emphasis is put on data munging and literate programming starting with "raw" data (individual stations, individual fish measurements) and culminating with deliverance of publishable output produced from a single coded document file.
This VRE provides access to processing as well as to data preparation and sharing facilities, including: an online R development environment (RStudio), data mining algorithms, a tabular data management application, GIS maps of environmental and biological data, access to biodiversity occurrence records and taxonomic data from major data providers (e.g. OBIS, GBIF, WoRMS, Catalog of Life), state-of-the-art stock assessment models and sharing tools (Workspace, Social Networking).
#9 Updated by Leonardo Candela over 3 years ago
- % Done changed from 10 to 80
- Status changed from New to Planned
The VRE is almost ready https://i-marine.d4science.org/group/ices_tcre/ices_tcre
There is one issue issue with the GeoExplorer we are going to fix.
As soon as it is fixed I'll change the Status.